![]() GeneCoder is a comprehensive and customizable Molecular Biology Software package for use in molecular cloning and sequence analysis of DNA and protein sequences. 4-12: PHP programming language basics – Writing and using your own functions.4-11: Regular expressions in PHP – Retrieving matches position by using the PREG_OFFSET_CAPTURE flag in preg_match() and preg_match_all() calls.4-10: Regular expressions in PHP – retrieving all matches to a pattern in a string with preg_match_all() including overlapping matches.4-9: Regular expressions in PHP – retrieving matches to patterns with preg_match() called with the $matches argument.4-8: Using regular expressions in PHP – metacharacters and preg_match() basics.4-7: PHP programming language basics – more on strings and biological sequences manipulation with predefined functions.4-6: PHP programming language basics – built-in predefined functions, strings and biological sequences manipulation.4-5: PHP programming language basics – conditional statements – if, elseif, else.4-4: PHP programming language basics – predefined variables.4-3: PHP programming language basics – arrays.4-2: PHP programming language basics – statements, variables, strings.4-1: Dynamic web pages with PHP – A simple (yet useful) example. ![]() Chapter 4: Adding a dynamic layer – Introducing the PHP programming language.3-11: Getting input from users on the World Wide Web – Creating and managing web forms.3-8: Introducing HTML5 footer, header, nav, article, section and aside elements.3-6: Styling your webpages or website with CSS.3-2: Uploading local files to a remote server.Your first webpage, Learning HTML and CSS.2-7: Setting up a Linux Web Server - Reference Summary.2-5: Installing a LAMP (Linux, Apache, PHP, MySQL) Server.2-4: Installing and using Open SSH Server for remote connections.The LINUX operating system - Setting up a Linux Web Server.1-4: Domain Name Servers: DNS, matching network IP addresses to domain names. ![]() The ABI 3130 xl Genetic Analyzer to a format that can be read with EditView.ĮditView is available from ABI (1-2: The TCP/IP Family of Internet Protocols Please note that you might have to configure your computer so itįrom ABI allows you to convert the chromatograms from the format created by Its operating system) from the respective web page by selecting the appropriate linkįrom the table below. You can download your preferred software (appropriate for your computer platform and *.ab1 files can be viewed (and edited) only with software programs capable of opening chromatogram files.įree Sequence/ChromatogramViewing Software: You may also change the file extension from *.seq to (text editor software such as Word, NotePad, etc.). *.seq files are plain text files containing your sequence in FASTA formatĪnd can be opened with any software capable of viewing plain text or FASTA format files To download, please select the appropriate link below: To open compressed *.sit files on your computer, you can use Stuffit Expander (free) or WinZip (trial version). View trace file (*.ab1) for each individual sampleĭownload individual trace file (*.ab1), sequence file (*.seq), or quality file (*.qual) View quality score (*.qual) for each individual sample Image file (.gif) for each sample of the corresponding orderĭownload an uncompressed file *(.seq) with a singleĬoncatenated text file (in FASTA format) of all nucleotide sequences generated for ![]() Please note that you have several options to download and view your sequencing results:ĭownload a compressed file (*.sit) containing chromatogramįiles (*.ab1), sequence files (*.txt), quality files (*.qual), and trace To access our data server, please log into your account and click on the The MGH CCIB DNA Core does not provide the option of long-term data archiving all data generated at our core facility are kept for about one year before being deleted from our server. (chromatogram files, text files, quality files) as soon as they are available. ![]() We strongly encourage our users to download their sequencing data Users will receive an automated email notification once their sequencing data can be securely accessed through our website. Sanger DNA Sequencing results are posted on our website immediately after our sequencing experts have inspected each individual Sanger DNA Sequencing chromatogram (trace file) of the corresponding sequencing run. ![]()
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